T. Mun, A. Kuhnle, C. Boucher, T. Gagie, B. Langmead, and G. Manzini, “Matching reads to many genomes with the r-index. Accepted at J. Comp. Bio. 2019. arXiv:1908.01263.
A. Kuhnle*, T. Mun*, C. Boucher, T. Gagie, B. Langmead, and G. Manzini, Efficient Construction of a Complete Index for Pan-Genomics Read Alignment. Accepted at J. Comp. Bio. 2019. arXiv:1811.06933.
C. Boucher, T. Gagie, A. Kuhnle, B. Langmead, G. Manzini, and T. Mun, Prefix-free parsing for building big BWTs. Algorithms for Molecular Biology, vol. 14, no. 1, p. 13, May 2019. doi:10.1186/s13015-019-0148-5
* Authors contributed equally.